Having the following data frame, group A have 4 samples, B 3 samples and C 1 sample:
group data_1 data_2
0 A 1 4
1 A 2 5
2 A 3 6
3 A 4 7
4 B 1 4
5 B 2 5
6 B 3 6
7 C 1 4
I would like to transform the data into numpy array, where each row is a group with all its samples and zero padding for groups that have fewer samples.
Resulting in an array like so:
[
[[1,4],[2,5],[3,6],[4,7]], # this is A group 4 samples
[[1,4],[2,5],[3,6],[0,0]], # this is B group 3 samples
[[1,4],[0,0],[0,0],[0,0]], # this is C group 1 sample
]
First is necessary add missing values - first solution with unstack
and stack
, counter Series is created by cumcount
.
Second solution use reindex
by MultiIndex
.
Last use lambda function with groupby
, convert to numpy array by values
and last to lists:
g = df.groupby('group').cumcount()
L = (df.set_index(['group',g])
.unstack(fill_value=0)
.stack().groupby(level=0)
.apply(lambda x: x.values.tolist())
.tolist())
print (L)
[[[1, 4], [2, 5], [3, 6], [4, 7]],
[[1, 4], [2, 5], [3, 6], [0, 0]],
[[1, 4], [0, 0], [0, 0], [0, 0]]]
Another solution:
g = df.groupby('group').cumcount()
mux = pd.MultiIndex.from_product([df['group'].unique(), g.unique()])
L = (df.set_index(['group',g])
.reindex(mux, fill_value=0)
.groupby(level=0)['data_1','data_2']
.apply(lambda x: x.values.tolist())
.tolist()
)
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